12. Energy and Respiration Flashcards

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1
Q

From where can living organisms obtain a continuous source of energy?

A

Chemical potential energy from nutrient molecules, or the absorption of light energy.

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2
Q

How is photosynthesis important to living organisms?

A

Photosynthesis converts light energy into chemical potential energy - it provides an energy supply and usable carbon compounds.

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3
Q

Why is having a source of carbon important?

A

Carbon is found in all biological macromolecules, which are essential to living organisms.
Autotrophs can use an inorganic source of carbon (CO2), but heterotrophs need a ready-made organic supply.

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4
Q

How can organic compounds be used in living organisms?

A

Building blocks for other, more complex organic molecules essential to the living organism, or as a representation of the chemical potential energy that can be released when they are broken down in respiration. This energy can be used to do work.

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5
Q

What are some examples of work in a living organism?

A
  • Anabolic reactions (the synthesis of complex substances from simpler ones, eg. polysaccharides from monosaccharides).
  • Active transport (eg. sodium-potassium pump).
  • Mechanical work (eg. movement of cilia and flagella, amoeboid movement, movement of vesicles through cytoplasm).
  • Bioluminescence and electrical discharge.
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6
Q

How do different organisms maintain a constant body temperature?

A

Ectotherms use thermal energy from their external environment to warm their bodies.
Endotherms (mammals, birds) use thermal energy released from metabolic reactions within their bodies, to maintain a temperature above that of their surroundings when necessary. Constant body temperature is also maintained through negative feedback loops.

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7
Q

What must happen in order for work to be done?

A

Energy-requiring reactions must link with energy-yielding reactions.

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8
Q

What is a multi-step reaction?

A

In a multi-step reaction, a series of elementary steps lead to an overall reaction. In each step, a small amount of the reaction’s total energy is released. They allow precise control of the reaction via feedback mechanisms and they allow optimal energy usage - if all energy were available at once then much of it would be wasted.

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9
Q

Give an example of a multi-step reaction.

A

An example is the respiration equation (the complete oxidation of glucose in aerobic conditions). It releases 2870kJ of energy.

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10
Q

Why can’t glucose react ‘naturally’?

A

Glucose, although energy-rich, is quite stable due to its high activation energy. The activation energy in living organisms can be overcome through the use of enzymes (which lower the activation energy by providing an alternate pathway for the reaction), or through the phosphorylation of glucose.

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11
Q

How is energy from respiration harnessed?

A

Rather than the energy released from each step being harnessed directly to be used in work, a more flexible method occurs where energy-yielding reactions in all organisms produce the universal intermediary molecule, ATP. ATP is used for all the energy-requiring reactions in the cell.

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12
Q

What is the structure of ATP?

A

Three phosphate groups, the last one bonded to a ribose sugar, the sugar bonded to an adenine nitrogenous base.

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13
Q

How much energy is released in the hydrolysis of ATP?

A

When the first and second phosphate groups are removed (ATP -> ADP and ADP -> AMP), 30.5kJ/mol are released. When the last phosphate group is removed, only 14.2kJ/mol are released. The two outer bonds are therefore considered ‘high-energy’, but this should be avoided as the energy released doesn’t come simply from the breaking of bonds, but from the changes in chemical potential energy in all parts of the system.
All of these reactions are reversible. Water is added and an inorganic phosphate group removed.

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14
Q

What are some key features of ATP?

A

It is easily hydrolysed and therefore has a high interconversion rate (ATP and ADP). This is useful to the cell as energy can easily be made available and restored. It is small and water-soluble, making it very easy to transport within the cell.

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15
Q

Energy data around the usage of ATP.

A

A resting human can use about 40kg per day, but at any one time there are only about 5g of ATP. During strenuous exercise, the rate of breakdown can reach 0.5kg/min.

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16
Q

What is the difference between an energy storage and energy currency molecule?

A

An energy storage molecule can be a short-term (glucose, sucrose) or long-term (glycogen, starch, triglyceride) store of chemical potential energy for the cell. An energy currency molecule, like ATP, is an immediate donor of energy to the cell’s energy-requiring reactions. Rather than using multiple different intermediates, the cell ‘trades’ in ATP.

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17
Q

Why are energy transfers inefficient?

A

At different stages in a multi-step reaction, the energy available may not correspond with / exceed the energy required. Many energy-requiring reactions do not use all the energy released by the hydrolysis of ATP -> ADP. The excess is lost as thermal energy. Some will always be released as thermal energy during energy transfers.

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18
Q

How does the sodium-potassium ion pump work?

A

The pump is a transmembrane protein that has binding sites for Na ions and ATP on the inner end, and K ions on the outer end. It acts as an ATPase, hydrolysing ATP to ADP to release energy. This energy is used in the active transport of Na and K ions. The protein changes shape to pump 3 Na out and 2 K in for each molecule of ATP. This creates a potential difference across the membrane (inner more - than outside).
Some diffusion down a conc. gradient will occur, but it is easier for K to leave than for Na to enter, so this p.d. is actually made stronger.

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19
Q

What is an example of the p.d. in a living organism?

A

The resting potential of a nerve cell. It is specialised to exaggerate this difference.
Around 50% of the ATP in a resting mammal is devoted to maintaining the ionic content of a cell.

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20
Q

Describe the structure of a mitochondrion.

A

Filamentous/rod-shaped organelle, 0.5-1um diameter. Can change shape.
Double membrane, outer is slightly more permeable to small molecules. Inner has infoldings (cristae) to increase surface area, more metabolically active mitochondria have longer, more densely packed cristae. Inner membrane studded with ATP synthase (9nm), attached by stalks.
Intermembrane space has lower pH than matrix (high H ion concentration from e- transport chain).
Matrix contains circular DNA, 70S ribosomes, enzymes needed for link reaction and Krebs cycle.

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21
Q

How is the energy needed for ATP synthesis made available?

A

By reorganising chemical bonds in respiration (chemical potential energy) and by using electrical potential energy via chemiosmosis.

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22
Q

What is respiration in basic terms?

A

A reaction in which organic molecule are used as fuel. The main fuel is glucose but some cells can also respire fatty acids, glycerol or amino acids. The organic molecules are broken down in multi-step reactions to release chemical potential energy, which can then be harnessed to synthesise ATP.

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23
Q

What are the stages of respiration and where do they occur?

A

Glycolysis - cytoplasm.
Link reaction - mitochondrial matrix.
Krebs cycle - mitochondrial matrix.
Oxidative phosphorylation + e- transport chain - inner mitochondrial membrane.
Reduction of oxygen - mitochondrial matrix.

Anaerobic - cytoplasm.

24
Q

What is glycolysis?

A

Glycolysis is the splitting/lysis of glucose. It is a multi-step reaction in which glucose is converted to two 3C pyruvate molecules. Energy is required in the phosphorylation of glucose, but is released later in the reaction, and can be used to synthesise ATP. There is a net gain of 2ATP per glucose molecule.

25
Q

Describe the steps in glycolysis.

A

Glucose -> Fructose phosphate -> Fructose bisphosphate
- ATP used here to phosphorylate glucose.

Fructose bisphosphate -> 2 Triose phosphate (3C)

Triose phosphate -> intermediates (oxidation)

  • 2ATP synthesised
  • 2H removed, used to convert 2NAD -> 2 rNAD

Intermediates -> 2 Pyruvate (3C)
- 2ATP synthesised.

26
Q

What is the role of rNAD/rFAD?

A

Carrier of hydrogen. The hydrogen it carries can be easily transferred to other molecules and is used in oxidative phosphorylation to generate ATP.

27
Q

Describe some features of pyruvate.

A

It is high in chemical potential energy, some of which can be released in the Krebs cycle and oxidative phosphorylation if enough oxygen is available. However, it must first travel through the cytoplasm via active transport, through the outer and inner membranes, and into the mitochondrial matrix to be used in the link reaction.

28
Q

Describe the link reaction.

A

Pyruvate is decarboxylated (releasing carbon dioxide) and dehydrogenated to form an acetyl (2C) group. This then combines with coenzyme A to form acetyl coenzyme A, which goes on to the Krebs cycle. The hydrogen removed from pyruvate reduce NAD -> rNAD. Reversible.

29
Q

Describe the structure of coenzyme A.

A

Made up of a nucleoside (adenine + ribose) and a vitamin (pantothenic acid).

30
Q

What is the role of coenzyme A?

A

Carrier of acetyl groups to the Krebs cycle, where they can react with oxaloacetate (4C) to form citrate (6C).

31
Q

How else can acetyl coenzyme A be produced?

A

Fatty acids from fat metabolism go through a cycle in the mitochondrion where each turn shortens the chain by an acetyl unit, thus allowing for combination with coenzyme A.

32
Q

What is the Krebs cycle?

A

Closed pathway of enzyme-controlled reactions where acetyl combines with oxaloacetate to form citrate. The citrate is decarboxylated and dehydrogenated in a series of steps to yield carbon dioxide (waste gas) and hydrogens, used to reduce NAD and FAD. ATP is also generated via intermediates. Once oxaloacetate is regenerated, it can combine with an acetyl group to restart the cycle.

33
Q

Describe the steps in the Krebs cycle.

A

Acetyl CoA + Oxaloacetate -> Citrate + CoA

Citrate -> 5C + carbon dioxide + rNAD

5C -> 4C + carbon dioxide + rNAD

4C -> 4C (+ ATP via intermediate)

4C -> 4C + rFAD

4C -> Oxaloacetate + rNAD

34
Q

What important contribution does the Krebs cycle make?

A

The release of hydrogens, which can be used in oxidative phosphorylation to release energy for the synthesis of ATP.

35
Q

What is oxidative phosphorylation?

A

A combination of the electron transport chain and chemiosmosis. The activity of the e- transport chain provides the energy needed to create an electrochemical/proton gradient of H ions between the IM space (high conc.) and the mitochondrial matrix. In chemiosmosis, the electrical potential energy stored in this gradient is used to synthesise ATP.
The process is ‘oxidative’ because it uses oxygen as the final electron acceptor, a crucial component as it allows for more electrons and high energy molecules to be passed along, and maintains the hydrogen pumping that produces ATP.

36
Q

What is chemiosmosis?

A

The movement of ions across a partially permeable membrane bound structure, down their electrochemical gradient, eg. formation of ATP by movement of H ions across a membrane during cellular respiration / photosynthesis.

37
Q

Describe the electron transport chain.

A

rNAD and rFAD are oxidised, releasing the H they carry (which are split into H ion and e-). The energetic electron is transferred to the first in a series of electron carriers.
As the electron is passed from high to low energy carrier, it releases energy, some of which is used to actively transport H ions out into the IM space, setting up an electrochemical gradient.
These protons move back into the matrix through channel proteins in the inner membrane (facilitated diffusion). ATP synthase is associated with these, and it harnesses the electrical potential energy released by the protons passing through it to synthesise ATP via chemiosmosis.

38
Q

What is a respiratory complex?

A

A functional unit which consists of four different types of membrane protein (with which the electron carriers are associated). They are arranged in such a way that electrons can be passed from one to the other down an energy gradient.

39
Q

How does ATP synthase work?

A

The electrical potential energy released by the H ions allows the gamma part of the enzyme to rotate, changing the shape of the protein and exposing one of three binding sites. At each binding site one of three steps occurs:

  • binding of ADP and Pi
  • formation of tightly bound ATP
  • releasing ATP.
40
Q

What is the net gain of each molecule, per molecule of glucose?

A

Glycolysis

  • 2 pyruvate
  • 2 ATP
  • 2 rNAD

Link reaction + Krebs cycle

  • 6 carbon dioxide
  • 2 ATP
  • 8 rNAD, 2 rFAD

Oxidative phosphorylation

  • 2.5 ATP per rNAD
  • 1.5 ATP per rFAD
  • this is because 25% of E yield from transfer of electrons goes towards bringing ADP into the mitochondrial matrix and ATP into the cytoplasm.

OVERALL:
- 2 ATP used, 34 ATP produced = 32 ATP total

41
Q

When might anaerobic respiration occur?

A

When there is no free oxygen available for aerobic respiration. Without oxygen, there is no final electron/hydrogen acceptor in the electron transport chain and it therefores stop working and producing ATP. To gain even the 2 ATP from glycolysis, there must be a way for the H from the rNAD to be passed on. An alternative electron acceptor must be used.

42
Q

What is alcoholic fermentation?

A

The conversion of glucose to ethanol in anaerobic conditions. It occurs in organisms such as yeast, and in plant tissue. The hydrogen from rNAD is passed to ethanal, reducing it to ethanol. It releases the NAD and allows glycolysis to continue.

43
Q

Describe the steps of alcoholic fermentation.

A

GLYCOLYSIS: Glucose -> 2 Pyruvate
- yields 2 ATP, 2 pyruvate, 2 rNAD

DECARBOXYLATION: Pyruvate -> Ethanal
- releases carbon dioxide

REDUCTION: Ethanal -> Ethanol

  • uses alcohol dehydrogenase
  • ethanal accepts e-, reduced to ethanol
  • rNAD can be oxidised to NAD, glycolysis can restart.
44
Q

What is lactic fermentation?

A

The conversion of glucose to lactate in anaerobic conditions. Pyruvate acts directly as the hydrogen acceptor and is reduced to lactate by lactate dehydrogenase. It releases NAD and allows glycolysis to continue.

45
Q

How can the lactate be used in the body?

A

It is carried to the liver via the blood plasma and converted back to pyruvate. 20% of the incoming lactate is oxidised -> carbon dioxide and water once conditions are aerobic again. The remainder is converted to glycogen and stored in the liver.

46
Q

Can ethanol be used in yeast/plants?

A

The pathway leading to ethanol cannot be reversed. It is still toxic, however, and therefore disposed of as a waste product. Its remaining chemical potential energy is wasted.

47
Q

Describe the concept of oxygen debt.

A

When strenuous exercise occurs, more oxygen is required to support aerobic respiration in a person’s muscles. It takes some time for the heart and lungs to meet this demand, and during this time lactic fermentation occurs in the muscles, building up an oxygen deficit. Breathing rate and depth increase (staying there even after exercise) so that oxygen can be absorbed at a higher rate than when at rest.
This uptake of oxygen after exercise to ‘pay back’ the deficit is known as OXYGEN DEBT.

48
Q

Why must this deficit be repaid?

A
  • Conversion of lactate to glycogen in the liver
  • Reoxygenation of haemoglobin
  • High metabolic rate (many organs are functioning at above resting levels).
49
Q

Give examples of some respiratory substrates.

A

Glucose is the essential substrate for some cells (lymphocytes, RBCs, neurones), but other cells can also respire using lipids or amino acids (C-H skeleton can be converted into pyruvate or acetyl CoA).

50
Q

What are the energy values of each substrate?

A

Carbohydrate - 15.8 kJ/g
Lipid - 39.4 kJ/g
Protein - 17.0 kJ/g

Most of the energy released in respiration comes from the oxidation of hydrogen to water when reduced NAD and FAD are passed to the electron transport chain. Therefore more hydrogen = higher energy value.

51
Q

How is energy density found?

A

Burning a known mass of substrate in oxygen in a calorimeter. The energy released by the substrate will raise the temperature of the water inside the calorimeter. Measuring this increase will allow us to find the energy released and therefore the energy density of the substrate.

52
Q

What is the respiratory quotient?

A

Ratio of volume/moles carbon dioxide released : volume/moles oxygen taken in, in unit time.

53
Q

What are the typical RQ values of respiratory substrates?

A

Carbohydrate - 1.0
Lipid - 0.7
Protein - 0.9

54
Q

What does an RQ value of infinity suggest?

A

Anaerobic respiration (alcoholic fermentation), typically in yeast cells. In reality there will be some degree of aerobic respiration but the RQ value will still be very high.

55
Q

Which form of respiration produces no RQ value?

A

Lactic fermentation, as it doesn’t produce carbon dioxide.

56
Q

What issues exist with the growing of rice?

A

Rice is grown in flooded paddies to outcompete weeds, but there is a low concentration of oxygen and carbon dioxide available due to the slow rate of diffusion in liquids, and the fertile soil giving rise to aerobically respiring microorganisms.

57
Q

Describe the adaptations of rice.

A

The plants grow tall to expose their leaf surfaces (stomata) and flower spikes to the air, allowing the exchange of carbon dioxide and oxygen.
The stems contain aerenchyma, allowing gases to diffuse to underwater parts of the plant.
Air trapped between ridges of the underwater leaves (hydrophobic, corrugated surface to keep a thin layer of air in contact with the leaf surface).
Alcoholic fermentation still occurs sometimes, but the plants have a higher tolerance to ethanol and produce more alcohol dehydrogenase (breaks down ethanol).
Plants can therefore grow actively, even when oxygen is scarce.