1.1 Kinetoplastid parasites Flashcards

1
Q

<!--[if !supportLists]-->

1.1 ** <!--[endif]-->Kinetoplastid parasites**

LO

A

Learning Objectives

By the end of this lecture, you should be able to understand:

  1. How kinetoplastids are classified and some of the reasons behind this classification
  2. Some key features relating of kinetoplastid cell biology/biochemistry

**Mark Wiser – Protozoa and Human Disease (on PDF) **

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

**We will be focusing over the next four weeks on a series of infections that are collectively known as the kinetoplastids **

What is the classificaion overall schema?

A

Domain: Eukaryota

 Phylum: Eugenozoa

     Class: Kinetoplastida

         Order: Trypanosomatida

              Genus: *Phytomonas, Leptomonas Blastocrithidia*,
  • Crithidia, Trypanosoma*, LeishmamiaSpecies: T. brucei, T. cruzi, T. evansi, T. equiperdum,
  • T. congolense , T. vivax*, T. suis, L. major,

* L. donovani, L. infantum, L. brazilenesis**, etc
Those in bold are the medically relevant that we will be focusing on *

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

What classification domain are they?

Prokaryotes / Eukaryotes?

A

Classification Domain: eukaryotes

They are eukaryotes (true nucleus) – NOT VIRUS – NOT BACTARIA

They have a nucleus, they have membrane-bound organelles, mitochondria

They are not that simple, this single cell has the metabolic capacity to live, it poses the entire metabolic capability

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Classification Phylum: Eugenozoa (flagellate)

What is one of the closest relatives of kinetoplastids?
Where does the flagellar enter the cell body?
What processes are carred out at *^
Is it only flagella - what else?
What else has been argued with regards to the role of the flagella?

A

One of the closest relatives of the Kinetoplastids are the euglenoids which are predominantly photosynthetic free living organisms. Fresh water living Euglena are very closely related to the parasitic kinetoplastids

The flagellar itself enters the cell body by the flagellar pocket structure which is the mouth and anus of the parasite, this is where the parasite carries out the process of endocytosis i.e taking things from outside e.g taking up nutrients, and also the site of exocytosis (trying to get rid of things)

Everyone thinks that flagellar is only for motility, but how useful is this? Parasite will not be able to swim against the flow of a humans blood stream. In certain cases, it might be useful but what appears to be the case for the use of the flagellar is a whole raft of other things. For example attachment. It can use the flagella in the right conditions, it can use the flagella to attach to epithelial layers and remain within one part of the insect vector.

Also argued that there has been signal transduction molecules along the flagellar, it can actually play a role in sensing the new environment (not known yet but possible find out over the next five years)

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

The Euglenozoa (phylum) is split into two major classes

<!--[if !supportLists]-->

  1. <!--[endif]-->Euglenids

<!--[if !supportLists]-->

  1. <!--[endif]-->Kinetoplastids

Where do the kinetopasdis get there name? Where is this structure found?
Where is this structure located?

A

The kinetoplastida (kinetoplastids) get there name because of the structure found within there mitochondria called kinetoplast which is basically the mitochondrial genome (see diagram above, it is located close to the flagellar) it gives the class name of these organisms.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

The order: Trypanosomatida

What does this mean?

Are all members of this order parasitic?

Where do these parasites prefer to be (host)?
What can the human be thought of?

A

Trypanosomatida basically just means (cork screw motion)

All members of this order trypanosomatida are parasitic all are primarily pathogens of insects although there are a number that can have a secondary host.

A lot of the parasites that we will discuss prefer to be in insects are there hosts. We are just there to help the parasite get from host to host. From this view humans act as vectors for the parasite to move from insect to insect

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Classification Genus:

The different genera (genus) that make up the trypanosomatida (as we have said are all parasitic) include

    1. Leptomonas
    1. Blastocrithidia
    1. Crithidia

What are all of these? Where do they live?

A

These are all pathogens or parasites of various insects and live within the digest tracts within the insect vector and spread through insects, through feces.

They infect only insects and primarily live in the digestive tract

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Another genus of the trypanosomatida is the genus **phytomonas **

Where are these prodominately found?

Ho​w are they tansmitted?

A

Again these are predominately found in the digestive tracts of insects but they also infect plants.

Transmitted to plants by the feeding habbits of the vector, e.g from the saliva of the insect to the plant.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

From the plant perspective you can find phyto​monas all over the plants

How are they transmitted?

Are they a problem from an agricultural perspective?

A

They are transmitted via the feeding habbits of the insect vectors - in the saliva from the insects

They are not that much of a problem from an agricultural point of view because they don’t impinge on us as humans.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Classification Genus: Trypanosoma & Leishmania

The anmals that do impinge on mammals an other animals and there activities are better studied are the genera trypanosoma and leshmania

Where are they primarily found?
Where can they be transmitted - what organisms?
How are they transmitted?

A

The genera trypanasoma and leishmania again the vast majority are parasites of insects, as a group they can be transmitted to a raft of animals: fish, amphibians, birds and other mammals. If you go out into the wild most organisms are infected by a trypanosomia or leishmania species.

They are transmitted from the insect vector by its feeding habits, different species use saliva, so basically the parasite is spat out so trypanosoma brucei – we talk about this afternoon it is a salivarian parasite.

Passed from insect vector to human in the salaiva

T. brucie tranmistted by kissing bug/assasin - they bite to the face (kissing) as they epand they shit and you rub it in

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Classification Genus: Trypanosoma & Leishmania

Are they medically important

A

These are the medically important parasites that Dr. W will be taking about

T. brucei causes HAT

T. cruzi causes Chagas disease - endemic in latin america

Leishmaniasis caused by multiple speciesof leishmania- whic cause a raft of pathologies

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

Trypanosoma & Leishmania

Do they just infect humans?

What else can they infect?

Where is t. brucei found?

What do trypanosom’s cause?

A

Don’t just infect humans

They can infect any mammalian organism, e.g T brucei is mainly found in ungulates (hoofed mammals) particularly cattle thus a major problem from an agricultural perspective. In cattle and other ungulats, they cause a serious weight losing disease

Nagana in cattle

Surra in equine

These are wasting diesese that are all insect transmitted

Most are insect transmitted - one species is no insect transmitted and that is the parasite of horse T . equiperdum a close relative of T brucei

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Most trypanosoma are insect transmitted apart from?

what is it a close relative of?

What is dourine?

How is it transmitted?

Is there alot of pharmaceutical interest?

Are there any agricultural affects?

A

T. equiperdum which is a close relative of t. brucei

Trypanosomia species that is not insect transmitted is a parasite of of horses called trypanosoma equiperdum, this is closely related to the HAT and t. brucei.

They are very closely related t. equiperdum causes a venereal disease in horses called Dourine or covering skiness. The parasite has evolved an alternative mechanism of transmission to that of insect as a vector. That alternative transmission has resulted in this disease being in horses.

// Worry – could there be a possibility of t. brucie become an STI? \

Lack of pharmaceutical interest or investment – neglected in terms of drug development

Veterinary implications are huge; nagana in cattle and surra in equines caused a loss of income of about $5 billion in agriculture – this is because people people eat cattle but also used to plough fields.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Trypanosoma & Leishmania: basic morphology

** Complex life cycles = different morphologies**

Cell shapes…

**Where are they found in humans? **

Where can t. cruzi infect?
Where is leishmania specilised too? is it intracellular parasite what is it limited to?
Why do you need to have difference parasite forms?

Where within the host wil they live?

A

In humans they are found in different parts of the human cell, t. brucei is found in fluids so it is an extracellular parasite i.e found in the blood stream, found in the lymphatic system, also found in cerebral spinal fluid –

Whereas in humans t. cruzi can invade any nucleated cell within your body It can invade cells – intracellular pathogen

Leishmania is specialised intracellular parasite, it can only invade neutrophils and macrophages

Thus, there needs to be different parasite forms to live within those different environments, likewise parasite live in different places within the insect. T bruci lives in the midgut of the insect vector and then also in the salivary gland of the insect vector - leishmania stays in midgut and lives there before it is vomited up t. cruzi undergoes transmission through the gut and will have different morphological forms throughout the midgut

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

Trypanosoma & Leishmania: basic morphology

Different morphologies (also called parasite forms) distinguished by:

A
  1. Position of kinetoplast relative to nucleus
  2. Posiion of flagella pocket relative to nucleus
  3. Presence/size of flagellum

4 Presence of undulating membrane where as other parasites dont have the undulating membrane structur linking flagella to cell body

Different parasite forms – can be recognized by the position of the kinetoplast relative to the nucleus, the position of the flagellar pocket relative to the nucleus. Usually the kinetoplast and the flagellar are usually tightly linked so they go together – also the presents and size of the flagellar. There are certain parasite forms specifically the intracellular forms of t. cruzi where they have a very stubby flagellar whereas with the life cycle stages of t. bruci presents a flagellar throughout and then the flagellar is sometimes linked back to the cell body by a structure called the undulated membrane – other parasites don’t have this. More details in lectures

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

These are the predominant forms that will be mentioned not all parasite have these forms. They do have a front and a back-end and this is directed by the direction motility

What does the term mastigote mean?

What does the term amastigote mean?

What does the epimastigote mean?

What does the trypomastigote mean?

Learn to draw them all

A

The term mastigote means = having a flagellum

Amastigote = we say it doesn’t have a flagellum, is not protruding outside the cell body, it is retain within the flagellum pocket – this form is the intracellular stage of t.cruzi or leishmania

Promastigote = form the kinetoplast and the flagellar pocket is found towards the anterior side end of the cell compared to the nucleus – in this case the flagellum is not attached by undulating membrane – this is the other form found in leishmania cycle, leishmania on presents these two forms

Epimastigote = the kinetoplast and flagger pocket found towards the anterior relatively to the nucleus but unlike the promastigote form these tend to be closer to the nucleus and the flagellar pocket is attached back to the cell body by undulating membrane this form is the form that we culture t. cruzi in the lab and is the form that is found within the midgut of insect vector and also the form of t. bruci in saliva gland

Trypomastigote = form where the kinetoplast and the flagge pocket are found towards the back end of the nucleus and the flagella is also attached back to the cell body by undulating membrane – trypomastigote forms the bulk of the t. bruci life cyle and also forms certain infectious stages in t. cruzi life cycle

17
Q

Start looking at the microbiology and biochemistry

Trypanosoma & Leishmania: key features

Mitochondrion

How many do they have per cell?

What stucture does it have?
What do you use to stain for this?

A

Only has one of per cell,

< EM reading through a cell (picture), if you stripe away everything apart from the mitochondria you get a strange looking skeleton, the mitochondria spreads through the whole of the cell it has a complex lattice structure spread throughout cell you can stain for this using a dye (mitotracker – labels mitochondria)

18
Q

Mitochondrion - readily visualised using selective dyes (eg Mitotracker)/ confocal microscopy

What is the red blob?

A

One mitochondria is there throughout the cell

There are two genomes within trypanosome’s it stains in this case it stains the nucleas, red faint haze then you get the red blob, the kinetoplasts sit in the middle between these two discs

19
Q

Mitochondrion

Rod/bar shape in organelle

What is the DNA associated with kinetoplast called?

Is it a single molecule?

A

DNA associated with Kinetoplast is called kDNA constitutes mitochondrial genome

Network of DNA found in defined region of mitochondrion

20
Q

Kinetoplast

The kinetoplast acts as a marker for cell cycle (along with flagellum)

What does the kinetoplast act as within the cell cycle?
What can you compare?
If it is in the G1 phase? How many nuclues how many kinetoplasts?
Are there multiple types of kDNA? What form are they in?

A

You can use the kinetoplast to compare the ratio of kinetoplast to the nucleus to get an idea of where it is within the cycle.

1N1K you are in the G1 phase, 1N2K you are in the G2 phase, 2N2K you are in the M phase you can use this to look at cell populations are a whole and see where they are within the cell cycle.

There are multiple types of kDNA within the kinetoplast itself it is composed of 2 classes of circular DNA

They form highly concatenated structure they are intertwined - individual circular DNA molecules interconnected to form complex network, looped together like the Olympic rings and as a result o this they form a mesh network of interconnected complex

21
Q

There are two types of kDNA, one type called the maxi-circles, the other is min-circle

What are the two types of kDNA called?

maxi circle
Where does maxi circles get there name? how big is there genome?
What genes do they code for?
Do you have intron/exon structure?
What are the maxi-circles packed with? what do they contain?

Mini-circles

What size are they? 
How many do you have of them within a genome? 
What does each sub-class encode for?
A

Maxi-circles

(get that name because they are big)

<!--[if !supportLists]-->

· <!--[endif]-->20-50 copies per genome

<!--[if !supportLists]-->

· <!--[endif]-->20-38 kb in size

<!--[if !supportLists]-->

· <!--[endif]-->encode for several genes found on mitochondrial genomes in other organisms

<!--[if !supportLists]-->

· <!--[endif]-->don’t have introns/exons

<!--[if !supportLists]-->

· <!--[endif]-->(rRNA genes, genes encoding metabolic enzymes)

<!--[if !supportLists]-->

· <!--[endif]--> many [defective] pseudogenes (contain insertions or deletions and can push genes in – or out of genes) (also called cryptogenes) non-functional genes

Mini-circles

<!--[if !supportLists]-->

· <!--[endif]--> 5000-10,000 copies per genome

<!--[if !supportLists]-->

· <!--[endif]-->0.5-1.5 kb in size

<!--[if !supportLists]-->

· <!--[endif]-->heterogeneous high level of sequence variability

<!--[if !supportLists]-->

· <!--[endif]-->encodes for specialised RNA molecules called guide RNA (gRNA)

<!--[if !supportLists]-->

· <!--[endif]-->can be separate into sub-classes

22
Q

Kinetoplast and RNA editing

They are able to take something that is rubbish and edit it so that it can repair the damage that is within the genome

What are the two key steps of RNA editing?

What performs the modification?
What does it include?

A

<!--[if !supportLists]-->

  1. <!--[endif]-->Cryptogenes (crap DNA) on maxi-circle DNA transcribed to form (defective) pre-mRNA

<!--[if !supportLists]-->

  1. <!--[endif]-->Defective pre-mRNA (processed) undergoes posttranscriptional modification, modifications edit defective pre-mRNA

Modification performed by a multi-protein complex called the editosome

Editosome includes endonuclease, exonucleases, ligases, nucleotide transferases

components of editosome transcribed from nuclear encoded genes **position of the nucleotide modification determined by (good) gRNA gRNA complementary to regions undergoing editing **

23
Q

Kinetoplast and RNA editing

Modification performed by a multi-protein complex called the editosome

Editosome includes endonuclease, exonucleases, ligases, nucleotide transferases

Components of editosome transcribed from nuclear encoded genes position of the nucleotide modification determined by (guide) gRNA complementary to regions undergoing editing

** **What does the gDNA recognise?
What cleaves the sugar-phosphate backbone?
What does DNA ligase re-join?

A
  1. gDNA recognises a specific, homologous region of pre-mRNA to undergo editing
  2. an endonuclease cleaves the sugar-phosphate backbone of the pre-mRNA uridylyl transferase (TUTase) guides insertion of uridine(s) at cleavage site
  3. DNA ligase re-joins the two RNA strands
  4. Once the bases have been filled in, with this defective pre-mRNA as predetermined by the uridine insertions, a similar operations by uridine residues – by using this system you can take what is a crap RNA – by chopping off and adding in –
  5. You can take that message and conver it to a functional message and so it contains complete open reading frame
  6. that can then be translated into a functioning protein
24
Q

Mitochondrion (skipped)

Function can alter during life cycle eg bloodstream form Trypanosoma brucei (in mammalian host)

<!--[if !supportLists]-->

· <!--[endif]-->lack cytochrome chains

<!--[if !supportLists]-->

· <!--[endif]-->lacks oxidative phosphorylation pathways

<!--[if !supportLists]-->

· <!--[endif]-->relies on glycolysis for energy (ATP) production effectively an anaerobic organism

eg procyclic are aerobic form Trypanosoma brucei (in insect vector)

<!--[if !supportLists]-->

· <!--[endif]-->contains cytochrome chains

<!--[if !supportLists]-->

· <!--[endif]-->has oxidative phosphorylation pathways

Flagellum

A lot of cells have them

Trypanosoma & Leishmania: key features

1 per cell

It leaves cell body at flagella pocket

In some parasite forms,

<!--[if !supportLists]-->

· <!--[endif]-->flagellar remains attached to cell body for most of its length

<!--[if !supportLists]-->

· <!--[endif]-->flagellar is free from cell body

It is used in motility

<!--[if !supportLists]-->

· <!--[endif]-->attachment

<!--[if !supportLists]-->

· <!--[endif]-->sensor (?)

A
25
Q

Structure of the flagella

What stucture does it have?

A

Look and read through the rest of the lecture needs to be seen visually