10. Structure and functions of carbohydrates II -- Glucose metabolism Flashcards

1
Q

In anaerobic glycolysis, what are the products that can be formed?

A
  • Ethanol
  • lactic acid
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2
Q

Why is there a need for TCA cycle, instead of fully relying on anaerobic respiration for energy?

A

Only a fraction of energy is utilized from anaerobic respiration, and it does not yield much energy (2 ATP only).

  • TCA cycle generates the most amount of ATP and thus, the most energy
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3
Q

Why is ATP the main energy currency in cells?

A

phosphoanhydride bonds have bond energy, and amount of energy released when hydrolyzing these bonds are significant

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4
Q

What is the role of NAD+ and FAD?

A

They are electron carriers

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5
Q

How is NADH / FADH2 used to generate ATP?

Is NADH or FADH2 primarily used , why?

A

NADH and FADH2 give up electrons and protons through the protein complexes in the electron transport chain. These protons flow back through ATP synthase to convert ADP + P –> ATP

NADH is primarily used as electrons are at a higher energy level, allowing for more efficient pumping of protons through protein complexes. Also, NADH produces 2.5 ATP, compared to FADH2 which produces 1.5 ATP

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6
Q

AEROBIC RESP STEP 1 : GLYCOLYSIS PART 1

What is the function of kinase?

A

Catalyze transfer of phosphoryl (PO3) group from ATP to acceptor

  • but when –OH group (from glucose) attacks phosphoryl (PO3) group, the end group on glucose is phosphate (PO4-) cuz O from the -OH group is there
  • kinases require divalent metal ions for enzymatic activity (overcome repulsion between negatively charged phosphate grps and electron on target molecule, and to stabilise the negative charge of phosphate grps)
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7
Q

AEROBIC RESP STEP 1 : GLYCOLYSIS PART 1

Does hexokinase (glucose –> glyceraldehyde-3-P) OR phosphokinase (fructose-6-phosphate –> fructose 1,6-biphosphate) determine the rate of glycolysis and why?

A

Phosphokinase, as conversion of fruct-6-phosphate to fruct 1,6-biphosphate is irreversible. However, glyceraldehyde-3-p is not a unique intermediate of glycolysis and can be converted into glycogen.

Note: enzymes determine ROR bc they r in smaller amt and rmb frm LYC lect, catalytic step is slow and thus rate limiting

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8
Q

AEROBIC RESP STEP 1 : GLYCOLYSIS PART 1

How many ATP is generated / consumed in stage 1 for 1 glucose molecule?

A

2 ATP consumed as adding of phosphoryl (PO3(2-)) grp from ATP to acceptor by kinases (to 6C molecules) requires energy (overcome repulsion)

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9
Q

AEROBIC RESP STEP 1 : GLYCOLYSIS PART 2

How many ATP is generated for 1 glucose molecule in stage 2 of glycolysis?

A

For 1 x glyceraldhyde-3-P:
- 1 ATP generated from 1,3-biphosphoglycerate → 3-phosphoglycerate
- 1 ATP generated from Phosphoenolpyruvate → pyruvate

total : 2ATP

for 1 glucose, have 2 glyceraldehyde-3-P
total : 4 ATP

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10
Q

AEROBIC RESP STEP 1 : GLYCOLYSIS PART 2

What is the main product at the end of glycolysis stages to enter into TCA cycle?

A

Pyruvate

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11
Q

AEROBIC RESP STEP 1 : GLYCOLYSIS
What is the net yield of ATP generated from stages 1 and 2?

A

-1-1+2+2 = 2 ATP molecules

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12
Q

AEROBIC RESP STEP 1 : GLYCOLYSIS PART 2

Where does glycolysis occur?

A

Cytoplasm of cell

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13
Q

AEROBIC RESP STEP 2: TCA cycle

What is pyruvate converted to before entering TCA cycle?

A

pyruvate reduced to acetyl CoA via decarboxylation

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14
Q

AEROBIC RESP STEP 2: TCA cycle

Where does TCA cycle occur?

A

Mitochondrial matrix

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15
Q

AEROBIC RESP STEP 2: TCA cycle

How is acetyl CoA utilised in the TCA cycle, and what molecule is it regenerated as? Also, state the products from the cycle

A

Acetyl CoA (2C) combines with oxaloacetate (4C) to form citrate (6C).

Citrate goes through decarboxylation and oxidation.

It generates 2 CO2 and reduces 3 NAD+ into 3 NADH and 1 FAD into 1 FADH2, electrons are given. One of the steps also directly yields 1 ATP molecule.

After going through the whole cycle, oxaloacetate is regenerated, which reacts with more acetyl CoA….

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16
Q

How many ATP molecules can each molecule of NADH and FADH2 synthesise (through ETC) ?

A

NADH : 2.5 ATP
FADH2 : 1.5 ATP

17
Q

AEROBIC RESP STEP 2: TCA cycle

Thus, how many ATP molecules are generated from 1 glucose molecule from TCA cycle?

A

1 acetyl CoA molecule:
- 1 ATP directly from cycle
- 3 NADH = 3 x 2.5 = 7.5
- 1 FADH2 = 1.5
total = 10 ATP

Thus, for one molecule of glucose which forms 2 acetyl CoA and 2 CO2, 20 ATP is yielded

18
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

Where does oxidative phosphorylation occur?

A

inner mitochondrial membrane (which is the outside of mitochondrial matrix where TCA cycle occurs)

19
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

In oxidative phosphorylation, what is the main reaction ongoing?

A

Redox
- reduction of oxygen into H2O
- oxidation of NADH and FADH2 back into NAD+ and FAD

20
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

What is the main idea behind Oxidative phosphorylation in generating energy?

A

NADH and FADH2 give up their electrons and protons. Energy from electrons are used to pump protons from matrix into the inner mitochondrial membrane, thus forming a proton gradient. protons flow back into the matrix through ATP synthase, and energy from protons causes ADP to combine with P to form ATP.

21
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

Write the equation of NADH conversion into NAD+ in the ETC

A

NADH –> NAD+ + H+ +2 e-

22
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

Which protein complex does protons and electrons from NADH and FADH2 go through?

A

NADH : protein complex I
FADH2 : protein complex II

23
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

Why is NADH the main substrate used to generate energy for ATP synthesis instead of FADH2?

A

electrons from NADH are at a higher energy level and thus energy from electrons allows more efficient pumping of electrons through protein complex I.

24
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

Protein complex II (FADH2) does not pump protons across the membrane and protons are released back into mitochondrial matrix. True or False?

A

True

(the electrons from FADH2 are transferred to ubiquinone (Coenzyme Q), reducing it to ubiquinol (CoQH2). During this process, FADH2 is oxidized back to FAD. Unlike complex I, complex II does not pump protons across the membrane; instead, the protons released during the conversion of succinate to fumarate are released into the mitochondrial matrix)

25
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

Explain how does ATP synthase synthesize ATP from ADP and P.[3]

A
  • The mitochondrial matrix has low [H+] while the intermembrane space has high [H+] due to ETC pumping H+ into intermembrane space
  • Thus, the existence of the proton and pH gradient causes H+ to be pumped from intermembrane space into mitochondrial matrix through ATP synthase.
  • Since protons are high in energy, when H+ flows through ATP synthase, energy is generated which causes ADP + P –> ATP
26
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

What do mitochondrial shuttles do?

A
  • After ETC, electron carriers exist as oxidised forms NAD+ and FAD.
  • However, NADH and FADH2 (reduced form) are the ones that provide energy for ETC
  • NADH generated in glycolysis (in cytoplasm) cannot directly pass through inner mitochondria membrane into the matrix
  • Thus, mitochondria shuttles allows the NADH from glycolysis to pass through into matrix.
    • Note : NADH passes its protons to FAD, and FAD carries the protons through the shuttle, so 1.5 ATP instead of 2.5 ATP
27
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

The malate-aspartate shuttle brings electrons from cytoplasmic NADH into mitochondria in ____ and ___

A

heart, liver

28
Q

AEROBIC RESP STEP 3 : Oxidative phosphorylation (electron transport chain ETC)

How many molecules of ATP are generated from 1 glucose molecule in oxidative phosphorylation (involving NADH/FADH2)?

A

From glycolysis:
- Stage I : 1x2 molecules of NADH formed (assuming transport by glycerol-3-P shuttle) : 1.5x2 = 3 ATP

From TCA:
- 2 NADH formed in oxidative decarboxylation
- 2 x 2.5 = 5 ATP

total: 8 ATP from oxidative phosphorylation