1. Nucleic Acids and Gene Expression Flashcards

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1
Q

Types of nucleic acids

A
  • DNA

- RNA

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2
Q

DNA

A

Deoxyribonucleic acid

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3
Q

RNA

A

Ribonucleic acid

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4
Q

Components of nucleotides

A
  • 5-carbon/pentose sugar (ribose or deoxyribose)
  • nitrogenous base (A,T,G,C,U)
  • phosphate group
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5
Q

Ribose vs Deoxyribose

A

Ref. to carbon 2 carrying hydroxyl group (-OH) or hydrogen atom

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6
Q

Types of nitrogenous bases

A
  • purines

- pyrimidines

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7
Q

Purines

A
  • A, adenine

- G, guanine

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8
Q

Pyrimidines

A
  • T, thymine
  • C, cytosine
  • U, uracil
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9
Q

Number of C in PURINES

A

5 carbon atoms

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10
Q

Number of C in PYRIMIDINES

A

4 carbon atoms

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11
Q

Which C is the nitrogenous base attached to?

A

Carbon 1

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12
Q

Which C is the phosphate group attached to?

A

Carbon 5

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13
Q

Formation of nucleotides

A
  • 3 components joined through condensation reactions involving removal of water molecules
  • nitrogenous base attached to C1 through a glycosidic bond, forming a NUCLEOSIDE
  • pentose sugar attached to C5 through a phosphoester bond, forming a NUCLEOTIDE
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14
Q

Formation of nucleic acids from nucleotides

A
  • nucleotides added as deoxyribonucleoside triphosphates (dNTPs) / ribonucleoside triphosphates (rNTPs)
  • lose 2 phosphate groups (pyrophosphate) in the process
  • condensation between 5’ phosphate group of incoming nucleotide and free 3’ -OH group of growing polynucleotide chain; phosphodiester bond
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15
Q

Structure of DNA

A
  • 2 strands of deoxyribonucleotide chains twisted to form double helix; held by hydrogen bonds between complementary nitrogenous bases (2 in A-T, 3 in G-C)
  • uniform diameter of 2.0nm between the 2 sugar-phosphate backbones (as purine always paired with pyrimidine)
  • one complete turn of helix consists of 10 base pairs spanning 3.4 nm
  • anti-parallel
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16
Q

Significance of base pairing in DNA

A
  • large number of hydrogen bonds confer stability; template for replication of new DNA strands and transmission of genetic information stored
  • deviation of diameter from 2.0nm; anomalies easily detected and allows proofreading during DNA replication
17
Q

Bonds in a DNA molecule

A
  • H bonds between complementary base pairs
  • hydrophobic interactions between stacked bases
  • phosphodiester bonds between nucelotides
18
Q

DNA packing

A
  • DNA molecule negatively charged, histones positively charged
  • DNA double helix winds around group of 8 histone proteins, forming nucleosomes
  • adjacent nucelosomes linked by linker DNA, forming bead-on-string structure
  • coils into 30nm thick solenoid, stabilised by H1 histones
  • solenoid folds into 300nm thick loop domains, stabilised by scaffold proteins
  • further coils and packs into chromosome; 2 sister chromatids joined at centromere