1 - Microbiology Flashcards
What are common oral pathogens? What are the common presentations?
1) Streptococcus pyrogens (gr +, diplococci, coagulase +, beta hemolytic/clear) -> acute pharyngitis, scarlet fever (rash), impetigo, cellulitis, necrotizing fasciitis, Strep Toxic Shock Syndrome–> can lead to rheumatic fever, acute glomerulonephritis, bacterial endocarditis
2) Staph aureus (gr +, diplococci, coagulase -) -> lip ulcers (mucositits) and stomatits
3) Herpes (1=oral, 2=genital; icosahedral capsid, lin dsDNA) -> oral lesions, ulcers and cauliflowers
4) Coxsackievirus/hand-foot-mouth (ssRNA, small) -> presents as herpangina on the hand/foot/mouth in children and immunocompromised; enterovirus spread through fecal-oral
5) HPV -> STI that presents as pappillomas in the mouth/tongue; major cause of squamous, esophageal cx
6) Canida (yeast or hyphal(infectious) forms) normal flora, pathogenic in immunocompromised -> thrush or yeast infections
What are some common Oral Flora?
1) many species of anaerobes
2) Strep Viridans (gr +, diplocci, coagulase +, alpha hemolytic/green) -> cause of dental caries
3) Lactobacilli (gr +, rod, facultative anaerobe, forms lactic acid) -> associated w/ cavities and dental carries
4) Neisseria spp.
5) Diptheroids (nonpathogenic cornybacteria)
6) Mycoplasms
7) Spirochetes
What are some common causes of esophagitis?
1) GERD
2) Allergies: eosinophilic esophagitis
3) Infectious esophagitis: more common in immunocompromised
- Herpes: seen in bone marrow/solid organ transplants
- HPV/CMV: seen in bone marrow transplants
- Canidia: more common w/ HIV
What are common gastric pathogens?
1) Heliobacter pylori (gm -, rod/spiral, facultative aerobe, Urease +)
2) HSV/CMV -> think immunocompromised population
Describe Helobacter pylorui.
1) Gr -, rod/sprial shaped, facultative aerobe, Urease +
2) Pathogenesis: binds to gastric mucosa and induces an acute inflammatory rxn-> causes mucosal damage -> develops into chronic gastritis -> becomes Chronic Atrophic Gastritis -> Gastric Carcinoma
3) Virulence Factors: urease, Vac A, Cag A
- Urease: breaks urea into CO2 and NH4+ which raises the gastric pH and helps H.pylori survive in stomach
- Vac A: vacuolating cytotoxin attacks the mitochondria to make it permeable -> helps inhibit T-cell activation
- Cag A: Cag pathogenicity island is “injectable” into the cell and modulates several cell pathways; also seen to be an Oncogene
How is H. pylori infection diagnosed? Tx?
1) Glemsa or Wurthin-Starry stain
2) urease/pH test -> turns yellow to red as pH increase
3) culture
4) breath test -> breath out CO2, NH4+ and urease
5) antibody test
TX: Triple therapy = Proton Pump Inhibitor + 2 Ab
1) omeprazole
2) lansoprazole
3) bismuth subsalicylate
Describe Shigella GI infections.
1) Enterobacteriaceae: gr (-), rods, ferment glucose, oxidase (-)
- Shigella dysenteriae: most severe type and more common in under-developed countries -> produces Shiga Toxin
- Shigella flexnerii: most common in under-developed countries
- Shigella sonnei: most common in U.S.
- Shigella biydii: rare
2) Symptoms: presents as a range of disease from asymptomatic to watery diarrhea to colonic dysentery -> abdominal pain, fever, stools = low volume, bloody, mucoid, w/ Fecal Leukocytes
3) Shiga Toxin (shigella dysenteriae) can produce Reiter’s Syndrome (polyarthritis) and Hemolytic Uremic Syndrome
4) Pathogenesis: bacteria enter through M-Cells; eaten by mac’s and cause mac apoptosis; enter the basolateral enterocyte and replicate in Cytoplasm; invade neighbors via actin polymers
5) Epidemiology: Highly Infectious (Feces, Fingers, Fomites, Fly Feet); invasive at warmer (body) temps; common to close living quarters and poor hygiene (Cruise Ships, POWcamps, Water Park, Day Care, Prisons..)
6) Dx: Culture, stain of fecal leukocytes, Lactoferrin (quantitative from PMN granules)
Describe Salmonella Non-Typhoidal GI infections.
1) Enterobacteriaceae: gr(-), rods, glucose fermenters, oxidase (-)
2) S. enteritidis, S. typhimurium, S. heidelburg -> zoonotic, causes Enterocolitis or Sustained Bacteremia (in elderly and infants)
3) Enterocolitis:
- Symptoms: 8-48hr incubate, abrupt onset w/ low fever, nausea, vomiting, Watery Diarrhea; lasts 2-5d
- Pathogenesis: ingestion of contaminated food/water -> colonization on small intestine -> invasion of epithelium -> multiplication in endosome w/o destruction -> PMN activated (IL-8)
4) Bacteremia
- Symptoms: variable incubation, abrupt onset w/ Rapid High (septic) fever, few other GI symptoms; variable duration
- Pathogenesis: -Pathogenesis: ingestion of contaminated food/water -> colonization on small intestine -> invasion of epithelium -> multiplication in endosome w/o destruction -> invasion of bloodstream -> focal lesions in lungs, bones, heart, etc
* *can progress to septic shock -> LPS/LipA
5) Common Sources: eggs (50%), unpasteurized milk, meat, vegetables
Describe typhoidal salmonella infection.
1) Enterobacteriaceae: gr (-), rod, glucose fermenter, oxidase (-)
2) S. typhi, S. paratyphi -> only in humans and leads to Typhoid Fever
3) Symptoms: incubate 7-20d, insidious onset w/ a gradual rising fever to a high plateau (typhoidal state), early constipation, later bloody diarrhea; lasts several weeks
4) Pathogenesis: ingestion of contaminated food/water -> colonization in small intestine -> invasion THROUGH M-Cells/Peyer’s Patches -> replicate in macs and travel in bloodstream to form focal lesions throughout the body
5) Virulence Factors: Capsule (not in non-typhoidal), survives in mac’s, can exist in carrier state
6) Vaccine: 1) whole cell killed -> poor efficacy; 2) Attenuated Live/ Purified Capsule Antigen -> high efficacy + cost
Describe Yersinia GI infections.
1) Enterobacteriaceae: gr (-), rods, glucose fermenters, oxidase (-)
2) Y. pseudotuberculosis, Y. enterocoltica: zoonotic (pigs); high in Europe/Scandanavia -> grown well at 4C
3) Enterocolitis: fever, abdominal pain, inflammatory diarrhea; can progress to Reiter’s Syndrome: polyarthritis
4) Mesenteric Lymphadenitis: mimic appendicitis
5) Entraintestinal infections (less common)
Describe Eschericia coli GI infections.
1) Enterobacteriaceae: gr (-), rods, LACTOSE fermenters, oxidase (-)
2) ETEC, EIEC, and EPEC present as Secretory diarrhea, no fecal PMNs, no blood,
A) ETEC: characterized as Traveler’s diarrhea and Children’s diarrhea -> common in Troops in Africa/ME
-Pathogenesis: ingestion of contaminated food/water -> colonization of small intestine -> release enterotoxins LT (temp labile) and ST (temp stable) -> cause raise in cAMP/cGMP, which cause a high osmotic gradient and a lots of water (diarrhea)
B) EIEC: presents like shigella w/ symptoms ranging from watery diarrhea to dysentery -> common in children
C) EPEC: acute and chronic diarrhea in children form attaching/effacing lesions via Pathogenicity Island (PAI) -> release Shiga toxin -> binds Gb3 on glomeruli and inhibit protein synthesis -> destruction of glomerular cells and decreased GFR -> ARF
-Hemolytic Uremic Syndrome: when antibiotics are given to tx STECs there is a higher risk that the shiga-producing bacteriophage is stimulated into lytic phase and begins to replicate -> rapid increase in toxin and rapid HUS
4) Epidemiology: zoonotic transmission, LOW infectious dose -> common of Water Parks, Day Care, Instiutions
5) Prevent: cook meat (>160F), wash vegetables, pastuerize milk/juice,
6) Dx: ELISA, PCR
Describe Campylobacter jejuni GI infections.
- Top cause of bacterial diarrhea in US
1) Gm (-), tiny gull-shaped rods, microaerophilic, oxidase (+)
2) Zoonotic: birds and others
3) Inflammatory Diarrhea: PMNs, cramps, bloody diarrhea (late)
4) Complications: Guillain Barre Syndrome (auto-immume respose from cross-reaction between LPS core and myelin); Reiter’s Syndrome (reactive poly-arthritis, urinary tract, eyes, skin, mucus membranes)
5) Dx: CAMPE plate -> stool/blood @ 42C in atmosphere w/ less O2 and more CO2
- Top cause of bacterial diarrhea in US
Describe Vibrionaceae GI infections.
1) V. cholerae, V. parahaemolyticus: gm (-), comma-shaped rods, glucose fermenter, oxidase (+)
2) Cholerae: serotype O1(Classical and El Tor) and O139 cause epidemic and pandemic cholera; others cause Cholera-like diarrhea, mild diarrhea or extra-intestinal infections
- profuse watery (rice water) diarrhea, vomiting and leg cramps (hypokalemia); can progress to hypovolemic shock -> low BP, weak pulse, sunken eyes, poor eye turgor, hyperventilation
- Pathogenesis: colonization of small intestine via Toxin Co-Regulated Pili (Tcp Pili) -> releases cholera toxin which activates cAMP/cGMP -> altered Na/Cl gradient causing massive water excretion -> rice water diarrhea
- Risk Factors: young children, travelers w/o immunity, blood group O
- Vaccines: killed whole cell, live attenuated
3) Parahemolyticus: acute watery diarrhea, occasional blood, severe cramping, abdominal pain, SHORT (15hrs)
- Pathogenesis: similar to cholera but produces Thermostable (direct) Hemolysin (Tdh)
- Epidemiology: uncooked seafood (oysters), common in Japan
4) Dx: agar plate for culture
5) Tx: Rehydration
Describe Clostridium difficile GI infection.
- *most common cause of nosocomial diarrhea
1) gr(+), rod, Spore forming, anaerobe
2) Pathogenesis: part of the normal flora of ~1% of population or exposed in hospital environment, but overgrows other flora to become pathogenic in the presence of antibiotic therapy -> invade enterocytes -> elaborates Toxin A (necrotizing cytotoxin) and Toxin B (disaggregation of actin filaments) -> causes white “psuedomembranous” plaques and necrosis
3) Symptoms: ranges from mild diarrhea to severe, necrotizing infection of colon
4) Dx: toxin testing (cytotoxic assay, PCR), stool culture (high false positive)
5) Tx: STOP the antibiotics, give metronidazole/vancomyacin as indicated; fecal transplant
What are the types of food borne illness?
1) Intoxication by pre-formed toxin in food: Clostridium botulinum, Staph aureus, Bacillus cereus
- incubation time: 1-6hrs
2) Intoxications caused by toxins manufactured by the body: Clostridium perfringes, E. coli, Vibrio cholerae
- incubation time: 8-12hrs
3) Intestinal invasive disease: salmonella, campylobacter jejuni.
- incubation time: 8-48 hrs
Describe the common bacterial GI infections associated with pre-formed toxins.
1) Clostridium botulinum: spores contaminate food (canned, smoked) -> spores germinated @ high pH -> in anaerobic conditions vegetative form grows and releases botulism toxin -> toxin is absorbed by small intestine/stomach -> interrupts ACh uptake at NMJ -> flaccid paralysis
2) Staph aureus: superantigen secreted by staph binds to MHCII APC and T-cells to cause unregulated release of inflamatory cytokines (IFN-g, TNF-a) -> cause vomiting (more) and diarrhea
3) Bacillus cereus: Emetic form is caused by a heat stable enterotoxin (rice, incubation 1-6hr); Diarrheal form is caused by infection by bacteria and secondary secretion of heat labile enterotoxin (meat, vegetables, sauces; incubation 8-24hrs)