1. Basic cytoskeleton, vesicle transport Flashcards

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1
Q

The cytoskeleton is a highly dynamic network of reorganizing filaments that extends throughout the cytoplasm. What are the functions of the cytoskeleton in plant, animal and fungal cells?

A
  • movement of the cells (more relevant in animals)
  • intracellular movement of organelles, vesicles, chromosomes
  • cell shape changes
  • cell wall microfibril orientation (plant cell)
  • support for the structure of the cells (more important in wall-less organisims e.g. animal cells)
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2
Q

The filament systems of the cytoskeleton

A
Microtubules (in plants)
intermediary filaments (laminale filamente in animal cells)
microfilaments = actin filaments (in plants)
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3
Q

Microtubules

A

see in electron microscope
Durchmesser: 25nm
Subunits: alpha and beta filaments
attached to MTOC (micotubuli orginasation center)
in animals called centrosom (not in plants, less centered)
- are long, hollow cylinders made of the protein tubulin
- much more rigid (starr) than actin
-speciality of plant cells: cortical microtubules

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4
Q

How can microtubles built up themselves?

A

They are associated with a GTP-bound tubulin heterodimer ar the plus-end of the microtubles (bind GTP)
13 protofilaments (in average - can be 12 or 17, variable from organisim to organisim) make 1 microtubule (alpha, beta, alpha, beta…)
beta: + end
alpha: - end

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5
Q

Microfilaments = actin filaments

A

helical filaments of the protein actin
diameter: 8nm
organized in viarity (linear bundels, 2D networks and 3D gels
most concentrated in cortex, just beneath plasma membrane
strongly associated with the nucleus (i.e. perinuclear as they lagely contribute nuclear migration in plants
- thinner and more flexible than microtubulins
subunits: G-action (globulin actin) arranged in F-actin (filamtens) (douple helix)
+ and - end (ATP bound and ADP bound end)
Microtubuls need GTP

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6
Q

Facts about microtubuls

A
  • anchored with their minus end to microtubule organization centeres (MTOCs)
  • an animals cells, the centrosoms constitutes a major central MTOC while
  • in plant cells, microtubuls originate from many different less well defined MOTCs
  • the basal body of the cilia and flagella represent major MOTXs als in some algea and geamtes of e.g. mosses, ferns and Ginko
  • the kinetochores of chromosomes, where microtubules originate during mitosis, also constitute MTOCs)
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7
Q

MTOCs of animal centrosomes containing ….

A

gamma-tubulin (pink rings on the surface), microtubuls are growing from gamma- tubulin ring complexes of the centrosome

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8
Q

How can animal microtubule dynamics can be visiulized?

A

By
-tubulin fused with GFP (green fluorescent protein) one can see growing and shrinking all the time
-GFP-EB1 is a microtubule-binding protein that binds to the GTP-loaded + end –> traces the growing
EB1: Endbinding protein 1 binds only on GTP bound end (stabilizes GTP end, is a marker)

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9
Q

Microtubules: dynamic instability - what is that? How can you explain it?

A

microtubules depolymerize 100x faster from an end containing GDP-tubulin than from one containing GTP tubulin
A GTP cap favors growth , but if it s lost, than depolymerisation ensues (folgt)
GTP bound: growing
GDP bound: shrinking
Individual microtubules can therefore alternate between a period of slow growth and rapid disassembly, a phenomene called dynamic instability

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10
Q

MTOC in plants

A

Centrosones are absent in higher plant cells, they contain many dispersed MTOCs (not 1 central centrosom)

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11
Q

Microtubule motor proteins - what can you say about them?

A

they confer differential movement along icrotubules towards the plus and minus ends
motor proteins move vesicles, chomosomes… along microtubilin

Kinesin; plus end directed motor (some kinesins)
Dynein: munis end directed motor

These motors fuelled with ATP

Special in plants:
Dynein consists of a light and a heavy chain BUT genes coding heavy chains and most of the light chains are no linger present in the genom of most flowering plants –> Dynein got lost and actin and myosin got their exercises (and Kinesin? TALK ABOUT THAT!)

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12
Q

Plants kinesin (and microtubules) are required for…

A
  • organelle movement (in some cases)
  • chromosome movement
  • Phragmoplast formation
  • cellulose microfibril alignment (????)
  • cell morphogenesis inducing polarity (???)
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13
Q

Microfilaments: the actin cytoskeleton

Plant microfilaments mediate many intracellular movement

A
  • movement of Golgi stacks
  • movement from the Golgi to the vacuole
  • movement of endosomal compartments
  • movement of peroxisomes
  • movement of the nucleus
  • morphogenesis e.g. cell shape and polarity
  • movement from trans-Golgi network to plasmamembrane
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14
Q

Myosin is ….what?

A
a plus end-directed motor for actin filaments (wieso FOR???)
-2 heavy chains (C terminus)
-neck or hinge (Schanier) region
-light chain connected with the 
-N Terminus
run on ATP (as all motors does)
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15
Q

Specials about the plant genome in plants (Myosin 11-type)

A
The genome of plants in addition to other myosins habour (aufweisen) a specific Myosin XI-subclass.
Currently known functions of diverse plant XI-type myosins
-Chloroplast movement
-Golgi movement
-Movement of endoplasmatic reticulum
-Cytoplasmic streaming
-nuclear movements !!!
-Actin structure
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16
Q

The Eucariotic Cell Division Cycle

A

Interphase (G1 Phase, S Phase, G2 Phase), M Phase (MITOSIS??? Talk about!), G1 Phase
Gphase = Gap-Phase (currently nothing happens)?
G1: enough nutrients? right size? Check!
S- Synthesis (of DNA + replication)
G2: Check for errors and miss match repaire

Chromosomenreplikation –> Mitosis (Prophase, Prometaphase, Metaphase, Anaphase, Telophase = Chromosomenseperation und Kondensation) –> Cytokinesis (Zellplasma teilt sich in 2 Tochterzellen)

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17
Q

Steps of a Plant Cell Division

A
  1. Chromosomenkondensation
  2. mit Spindeln in Center
  3. Seperation der Schwesterchromosomen
  4. Membranforming Vesikelfusion
  5. Dekondensation

Devision takes place inside out and not outside in as in animals

18
Q

DAPI can label DNA. We’re in the Mitosis right now.

What do you know about the Prophase, the first step?

A

Chromosomes condense
cortical microtubules coalesce (verschmelzen) into the preprophase band, prophase spindle forms around the nuclear envelope (die Kernhülle)
In the Cortex (äußerer Rand der Zelle): Tubulin disassemble everywhere but assemble as a preprophase band
Preprophase band is around the whole cell and just in plants
Band marks, where division will appeare, even it disappears later

19
Q

Prometaphase (seccond step during mitosis)

A

Preprophase band disappears
nuclear envelope breaks down
kinetochores mature
mitotic spindle captures (erfassen) chromosomes
Chromosomes congress (versammeln sich) to the spindle equator
Spindel not fully formed

20
Q

Metaphase (third step during mitosis)

A

mitotic spindle fully formed
chromosomes aligned at the spindle equator

this is different to animals, because the spindle are not pointed, no centrosomes, no centriole

21
Q

Anaphase (fourth step during mitosis)

A

Chromosomes move toward the poles and the poles separate

22
Q

Telophase (5th step durng mitosis)

A

nucleare envelope forms
Chromosomes start to decondensate
mitotic spindle break down
Phragmoplast is formed (vesicles are fusing to plate which becomes the cell wall later on, before: accumulation of vesicles)

23
Q

Cytokinesis (after Mitosis)

A

Cortical microtubules return
phragmoplast reaches parent cell wall to build a new wall between the daughter cells
(microtubles are assembled in the cortex (not needed anymore) and vesicles for the phragmoplast are still needed
plant: cortical microtubules

24
Q

Cell division: Difference between animals and plants?

A

Plants: Preprophase band, phragmoplast and cell plate, cortical microtubule array
Animals: Centrosomes/Centrioles: astral microtubules (nur während der Mitose entstehen)
Contractile ring, cleavage furrow (Furche), Midbody

Nicht so punktierters Chromosomen auseinander ziehen

25
Q

How can you label actin?

A

phalloidin binds to actin and it can be fluorescently labled

26
Q
#fact: was Desmosomen für Tiere sind, sind Plasmodesmata für Pflanzen
Model of cell plate formation right now?
A
  1. Assembly matrix with microtubules=Phragmoplast
  2. Tubular vesicular network
  3. Tubular network
  4. Fenestrated sheet

at the end of the cell plate: vesicles are needed

27
Q

Vesicle transport Import

A

Endocytosis (Endosomen entstehen, bei Tieren auch Lysosomen)

endosomes/prevacular compartment, trans-Golgi network, Vacuole, plants

28
Q

Vesicle transport Export

A

Exocytosis via the secretory pathway, endoplasmatic reticulum and golgi

29
Q

The Endoplasmatic reticulum (ER) (just facts, no functions)

A
  • provides the entry platform to secretory pathway
  • network like, mobile labyrinth of branching tubules, cicternea, and falttened sacks extending through the sytosol
  • 2 membranes enclosing an internal space: the ER lumen
  • rough ER and smooth ER, the rough ER has many ribosomes i.e. polysomes attached
  • site for co-translational process
  • pankreas: much proteins secreted (rauer ER)
  • connected to the nucleulus
30
Q

ER Functions

A
  • place of biosynthesis as well as place for intracellular transport and in many cases the enty to the secretory pathway
  • ER membrane is the site of synthesis of many lipids and proteins that enter the secretory pathway
  • first step of protein glycosylation take place in the ER
31
Q

Composition of the Golgi stacks: Dictyosom

A
cis: takes up proteins and leave ER in form of vesicles to Golgi
dictyosom in animals near the nucleus
trans: leaving vesicles 
Cis-Golgi network
cis csiterna
medial cisterna
trans cisterna
trans-Golgi network (vesicles float around)
32
Q

Golgi apperatus in plants

A
  • place of the synthesis of oligo- and polysaccaride sell wall components (except cellulose) such as pectins and hemicellulose (e.g. glucans and xyloglucans from glucose=
  • place of continued protein and lipid glycosylation
    e. g. of cell wall protein inducing hydroxypropyline-rich glycoproteins (HRGPs) such as extensins ans arabinogalactan proteins (AGPs)
  • cell wall polysaccarides enter the secretory pathway here in order to be exocytosed
33
Q

Golgi: difference between animals and plants

A

(most) Animal Cells: Golgi concentrated in a perinuclear region; animal cells: transport Golgi-derived transport vesicles via microtubules

Plant cells: dictyosomes (individual Golgi stacks and assiciated trans-Golgi network)spread throughout the cytoplasm
Plant cells: transpost of dictyosomes/golgi stacks via actin filaments

34
Q

Btw: Dictyosome=single Golgi stacks and associated trans-Golgi network
How does the forward (anterograde) transport from ER to Golgi works?

A

vesicles go from cisternae to cisternae

this transport requires coat protein II (COPII)-coated vesicles (needed for anterograd transport)

35
Q

Now the retrograd transport from the Golgi to the ER occures via …

A

Coatamer protein I (COPI) coated vesicles
transport back for things, that escaped the ER but shouldn’t, like chaperones - chaperones fold proteins in the ER and should stay there) –> proteins can be recycled

36
Q

Anterograd (forward) versus reterograd (backward or retrieval (wiedergewinnung) pathways

A

In ER: secretory proteins and resident (einwohner) proteins, außerdem KDEL (HEDL often in plants, bindet an C-Terminus der Proteine wenn Golgi erreicht wurde- wie Rücksendungsschein zu ER)
Sobald gebunden wurde: Rücksendung zumER wird eingeleitet

37
Q

Exocytosis and vascular vesicle transport

A

in Vauole zB digestion proteins
2 Routen (zur VAkuole + Exozytosis zu Zellmembrane)+1 retrograd route)
Exocytose für zB: pectines or cell wall modifing proteins
Für Weg zur Vakuole: Prävakuoläres Kompartiment (PVC) auch “multivaskulärer Körper” (MVB)

38
Q

What require exocytosis and other membrane fusion events fro docking and fusion?

A

v(esicle)-SNAREs and t(argent)-SNAREs
every v SNARE has their t SNARE <3
SNAREs also exist in Golgi - there are ~115 SNAREs in Plants)
Docking of transport vesicle and membrane fusion

39
Q

Zu transportierende Proteine= cargo Proteine

Specific pairing of cpmlementary v SNARE and t SNARE allows fusion of transport vesicles

A

with the correct target membrane

40
Q

Clathrin coated vesicles, uncoating… what do you know?

A

dynein: pinch vesicles off (GTPases in animals and in plants “dynein related proteins”)
Clathrin heavy and light chains
uncoated by heat shock protein
Vesicle formation (cargo protein, cargo receptor, adaptin and clathrin) –> clathrin coat –> coated vesicle –> uncoating –> naked transport vesicle