Biochemistry 431

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Decks in this class (80)

Chapter 5 Protein Function (R)
Ligand,
Transient,
Induced fit
92  cards
Homework Set # 1
Q 1 pt1 how can just a few elemen...,
Q 2 what are five periodic elemen...,
Q 3 draw the structures of the fo...
51  cards
Chapter Four: The three dimensional structure of proteins (Includes lecture)
What factors can cause denaturati...,
Chaotropic agent,
Native proteins
24  cards
Protein Diagnostic Methods
What are the two methods that obt...,
What are the two methods that obt...,
X ray crystallography steps pros ...
28  cards
Chapter 2 Study Questions
You are running your first marath...,
Useful ph equations,
Provides the least amount steric ...
9  cards
Lecture # 7 How Enzymes Work, Introduction to Kinetics
What is an enzyme,
Are some enzymes proteins,
Are some proteins enzymes
35  cards
Chapter 13 Bioenergetics and Biochemical Reaction Types
First law of thermodynamics,
Second law of thermodynamics,
1 explain how defining system and...
63  cards
Chapter 6 Reading Enzymes
Q 1 what components besides amino...,
Q 2 what are the functions of co ...,
Cofactor
75  cards
Lecture # 8 Enzyme Kinetics and Inhibition
Ks
1  cards
Enzyme Mechanisms
What are the four types of enzyma...,
Allostery,
What four amino acid commonly pho...
30  cards
Chapter 7 Carbohydrates
1 why are monosaccharides appropr...,
2 why are monosaccharides soluble...,
3 what are the naming conventions...
17  cards
Chapter 13 (right now only 13.1 and 13.3)
Q 36 why is the cells ability to ...,
Q 37 what is the most important c...,
Q 38 what is the net yield of atp...
18  cards
Reading 14.2/Lecture 13 Funneling into Glycolysis
Which type of enzyme is responsib...,
Which type of enzyme is responsib...,
Which type of enzyme is responsib...
25  cards
16.1 production of Acetyl-CoA (activated Acetate)
Q 1 the oxidative decarboxylation...,
Q 2 why is the thioester bond imp...,
Q 3 what are the two possible rol...
43  cards
Lecture and Reading 17; Membranes and Proteins
Q 30 what are the two components ...,
Q 31 in what ways are membrane tr...,
Passive transporters
9  cards
19.1 Oxidative Phosphorylation 731-747
Q 2 why does it make physiologica...,
Q 3 how does the structure of the...,
Q 5 what is the cellular role of ...
17  cards
Lecture # 17 Membranes and Proteins
What are the main storage lipids,
What are the two major structural...,
What type of lipid are the main c...
28  cards
Lecture # 16 Lipids and Membranes
What are the functions of lipids,
Storage of energy,
Insulation from environment
7  cards
Photosynthesis
Do plants have a mitochondrial etc,
What kind of redox scheme does th...,
What are the electron carrying co...
14  cards
Protein metabolism
What are the functions of dietary...,
Steps of protein digestion,
What cofactor is required for tra...
15  cards
Lipid Metabolism
What is the first step of fatty a...,
Steps of fatty acid oxidation,
How do you break a c c bond
8  cards
Ketone Bodies and Gluconeogenesis
Why are ketone bodies needed,
What enzyme is the liver lacking ...,
Under what conditions do we use k...
3  cards
Pentose Phosphate Pathway
Why convert nadh to nadph if the ...
1  cards
432 Lecture 24/8
What causes the tautomerization o...,
How is the dna nucleotide polymer...,
Polarity of ssdna
48  cards
432 Lecture 25
What are the three fundamental ru...,
Semi conservative model,
Requirements for dna polymerase a...
27  cards
DNA rep II
Bacterial helicase vs eukaryotic ...,
Ssb or rpa,
Dna pol iii
28  cards
Colon cancer-associated mutator DNA polymerase δ variant causes expansion of dNTP pools increasing its own infidelity
Which dna polymerases are implica...,
How does polys r696w become so mu...,
Dna polymerase delta
13  cards
Cellular response to DNA Damage and Repair
What type of dna damage does base...,
How are double stranded breaks re...,
Thymine dimers
21  cards
Cellular response to DNA Damage and Repair II
Tls,
Error prone repair def and mechanism,
When is nhej likely to occur
19  cards
Site Specific Recombination and Transposition
What are the two ways by which di...,
Site specific recombination struc...,
Recombinase proteins
20  cards
The Prokaryotic Transcription Apparatus
Central dogma,
What transcribes dna into rna,
What does rnap require
29  cards
Chapter 25 Quiz Questions
1 compare and contrast site speci...,
2 understand how inversions delet...,
3 vj recombination process
6  cards
Quiz Questions: Chapter 26
What is the function of a sigma f...,
Do all genes recognized by an rna...,
Sigma factors contain specific do...
7  cards
Eukaryotic Transcription Chapter 26
Which rnap is resistant to a aman...,
Which polymerase is very sensitiv...,
Where are the three rnaps located
26  cards
RNA Metabolism: RNA Processing
Processing of eukaryotic pre mrna,
What is capping,
What is the purpose of capping
28  cards
Molecular Techniques
Restriction endonuclease,
Palindromes,
How do organisms avoid using rest...
13  cards
Protein Metabolism I
Aminoacyl trna synthetases,
Stop codons,
Wobble hypothesis
36  cards
exam 3 paper
D7,
Smn c3,
Question
3  cards
Protein Metabolism III
0  cards
Antibiotics
Puromycin,
Chloramphenicol,
Diptheria toxin
4  cards
Protein Modification and Targeting
0  cards
Chaperone Assisted Protein Folding
What are the roles of chaperones,
Chaperones,
Grosel
5  cards
Sorting Motifs/prokaryotic v. eukaryotic protein sorting
What are the four requirements of...,
Inner membrane sorting motif in b...,
Er sorting motif
10  cards
General Protein Export in Bacteria
Step 1 gpe,
Step 2 gpe,
Step 3
6  cards
Targeting to the ER SRP
Srp,
What is the purpose of the srp,
Srp function process
3  cards
Glycosylation in the ER
Be sure to,
Why is glycosylation important,
Process of glycosylation
6  cards
NLS
Nls,
Nls characteristics,
A b importins
8  cards
Endocytosis
Clathrin,
Dynamin,
Clathrin dependent endocytosis
3  cards
Post-translational Modifications
0  cards
Jak-Stat Pathway
Process of jak stat pathway
1  cards
Covalent Attachments of lipids
What is the purpose of attaching ...,
Acylation,
Prenylation
5  cards
Legionaires Disease
What causes legionaires disease,
How does lp cause disease
2  cards
Protein Degradation
E1,
E2,
E3
4  cards
Ubiquination and protein degradation
Mono ubiquitination,
K11 ubiquitination,
K48 ubiquitination
6  cards
Amino Acids and half life
Stabilizing,
Destabilizing
2  cards
Regulation of Gene Expression General Principles and Overview
0  cards
EC Paper
Obg,
Deletion of rela and spot,
High cellular levels of p ppgpp
6  cards
L 22 Signaling
0  cards
Types of Signaling
Contact dependent,
Synaptic,
Paracrine
4  cards
Five Features of Signal-Transducing Systems
Specificity,
Amplification,
Modularity
5  cards
Simple-Two Component Signaling in Bacteria
Receptor features,
Simple two component signaling pr...
2  cards
Three Major Classes of cell surface receptors
Ion channel coupled receptors,
Enzyme coupled receptors,
G protein coupled receptors
3  cards
GPCR
Gcpr signaling step 1,
Gpcr step 2,
Gpcr step 3
7  cards
Sensitivity Adjustments
How do cells adjust their sensiti...,
How is the b adrenergic receptor ...
2  cards
RTK and example
Rtk,
Insulin rtk process,
Raf 1
5  cards
Types of small RNAs
Micro rnas,
Sirnas,
Rasirnas
3  cards
Basic Overview of generation of siRNAs and miRNAs and their mode of action
1,
2,
3
10  cards
RNA interference RNAi by miRNA
Pri mrna,
Pri mrna modification,
Pre mrna
4  cards
RNAPII binding
What are the five types of protei...,
Architectual regulators,
What is the function of the media...
3  cards
Euchromatin vs. Heterochromatin
Heterochromatin,
Eurochromatin,
How does acetylation effect trans...
3  cards
ATP-dependent chromatin remodeling
Two scenarios
1  cards
Successive histone modifications
Process
1  cards
Eukaryotic repressor proteins
Way in which eukaryotic repressor...
1  cards
Gal Operator
What is the purpose of gal,
Gal operon,
Gal 80
4  cards
Cooperative binding b-interferon gene
Hmga1,
Process
2  cards
Transcriptional Silencing
Transcriptional silencing
1  cards
Gene silencing by modification of histones
Process,
Sir 2,
Silencing of hmra and hmr alpha d...
3  cards
DNA methylation mediated gene silencing
Process,
Sin3a
2  cards
(NF-KB) multi-step cascade)
Process,
Ikb
2  cards
Insulators
Insulators
1  cards

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Biochemistry 431

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